A dataset containing NCBI information of 1000 eukaryotes. The variables are as follows:
Usage
data(eukaryotes_1000)Format
A data frame with 1000 rows and 19 variables:
- X.Organism.Name
Organism name at the species level
- taxid
NCBI taxid
- BioProject.Accession
BioProject Accession number (from BioProject database)
- BioProject.ID
BioProject ID
- Group
Commonly used organism groups: Animals, Fungi, Plants, Protists
- SubGroup
NCBI Taxonomy level below group: Mammals, Birds, Fishes, Flatworms, Insects, Amphibians, Reptiles, Roundworms, Ascomycetes, Basidiomycetes, Land Plants, Green Algae, Apicomplexans, Kinetoplasts
- Size..Mb.
Total length of DNA submitted for the project
- GC.
Percent of nitrogenous bases (guanine or cytosine) in DNA submitted for the project
- Assembly.Accession
Name of the genome assembly (from NCBI Assembly database)
- Replicons
Number of replicons in the assembly
- WGS
Four-letter Accession prefix followed by version as defined in WGS division of GenBank/INSDC
- Scaffolds
Number of scaffolds in the assembly
- Genes
Number of Genes annotated in the assembly
- Proteins
Number of Proteins annotated in the assembly
- Release.Date
First public sequence release for the project
- Modify.Date
Sequence modification date for the project
- Status
Highest level of assembly:
Chromosomes: one or more chromosomes are assembled
Scaffolds or contigs: sequence assembled but no chromosomes- Center
Origin of the sample
- BioSample.Accession
BioSample Accession number